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1

Evolution of the Toxins Muscarine and Psilocybin in a Family of Mushroom-Forming Fungi

Kosentka, Pawel, Sprague, Sarah L., Ryberg, Martin, Gartz, Jochen, May, Amanda L., Campagna, Shawn R., Matheny, P. Brandon, Stajich, Jason E.

Journal:

Year:

2013

Language:

english

File:

PDF, 394 KB

english, 2013

2

Insights into drylands biocrust microbiome: geography, soil depth, and crust type affect biocrust microbial communities and networks in Mojave Desert, USA

Pombubpa, Nuttapon, Pietrasiak, Nicole, De Ley, Paul, Stajich, Jason E

Journal:

FEMS Microbiology Ecology

Year:

2020

File:

PDF, 4.73 MB

2020

3

A new high-quality draft genome assembly of the Chinese cordyceps Ophiocordyceps sinensis

Shu, Ruihao, Zhang, Jihong, Meng, Qian, Zhang, Huan, Zhou, Guiling, Li, Miaomiao, Wu, Peipei, Zhao, Yanni, Chen, Chao, Qin, Qilian, Stajich, Jason

Journal:

Genome Biology and Evolution

Year:

2020

File:

PDF, 1.42 MB

2020

4

Toward a Fully Resolved Fungal Tree of Life

James, Timothy Y., Stajich, Jason E., Hittinger, Chris Todd, Rokas, Antonis

Journal:

Annual Review of Microbiology

Year:

2020

File:

PDF, 472 KB

2020

5

Same-sex mating and the origin of the Vancouver Island Cryptococcus gattii outbreak

Fraser, James A., Giles, Steven S., Wenink, Emily C., Geunes-Boyer, Scarlett G., Wright, Jo Rae, Diezmann, Stephanie, Allen, Andria, Stajich, Jason E., Dietrich, Fred S., Perfect, John R.

Journal:

Year:

2005

Language:

english

File:

PDF, 370 KB

english, 2005

6

Ganglioside-induced differentiation-associated protein-1 is mutant in Charcot-Marie-Tooth disease type 4A/8q21

Baxter, Rachel V., Ben Othmane, Kamel, Rochelle, Julie M., Stajich, Jason E., Hulette, Christine, Dew-Knight, Susan, Hentati, Faycal, Ben Hamida, Mongi, Bel, S., Stenger, Judy E.

Journal:

Nature Genetics

Year:

2001

Language:

english

File:

PDF, 300 KB

english, 2001

7

5'-Serial Analysis of Gene Expression studies reveal a transcriptomic switch during fruiting body development inCoprinopsis cinerea

Chi Keung Cheng, Chun Hang Au, Sarah K Wilke, Jason E Stajich…

Journal:

Year:

2013

Language:

english

File:

PDF, 968 KB

english, 2013

8

Evolutionary histories of soil fungi are reflected in their large-scale biogeography

Treseder, Kathleen K., Maltz, Mia R., Hawkins, Bradford A., Fierer, Noah, Stajich, Jason E., McGuire, Krista L., Classen, Dr. Aimee

Journal:

Ecology Letters

Year:

2014

Language:

english

File:

PDF, 698 KB

english, 2014

9

Resolving Arthropod Phylogeny: Exploring Phylogenetic Signal within 41 kb of Protein-Coding Nuclear Gene Sequence

Regier, Jerome, Shultz, Jeffrey, Ganley, Austen, Hussey, April, Shi, Diane, Ball, Bernard, Zwick, Andreas, Stajich, Jason, Cummings, Michael, Martin, Joel, Cunningham, Clifford

Journal:

Systematic Biology

Year:

2008

Language:

english

File:

PDF, 737 KB

english, 2008

10

PCR Multiplexes Discriminate Fusarium Symbionts of Invasive Euwallacea Ambrosia Beetles that Inflict Damage on Numerous Tree Species Throughout the United States

Short, Dylan P. G., O’Donnell, Kerry, Stajich, Jason E., Hulcr, Jiri, Kijimoto, Teiya, Berger, Matthew C., Macias, Angie M., Spahr, Ellie J., Bateman, Craig C., Eskalen, Akif, Lynch, Shannon C., Cogna

Journal:

Year:

2017

Language:

english

File:

PDF, 1.09 MB

english, 2017

11

Shrub range expansion alters diversity and distribution of soil fungal communities across an alpine elevation gradient

Collins, Courtney G., Stajich, Jason E., Weber, Sören E., Pombubpa, Nuttapon, Diez, Jeffrey M.

Journal:

Molecular Ecology

Year:

2018

Language:

english

File:

PDF, 762 KB

english, 2018

12

Adaptive Evolution and Functional Redesign of Core Metabolic Proteins in Snakes

Castoe, Todd A., Jiang, Zhi J., Gu, Wanjun, Wang, Zhengyuan O., Pollock, David D., Stajich, Jason E.

Journal:

Year:

2008

Language:

english

File:

PDF, 465 KB

english, 2008

13

Serpentine Soils Do Not Limit Mycorrhizal Fungal Diversity

Branco, Sara, Ree, Richard H., Stajich, Jason E.

Journal:

Year:

2010

Language:

english

File:

PDF, 283 KB

english, 2010

14

MAFCO: A Compression Tool for MAF Files

Matos, Luís M. O., Neves, António J. R., Pratas, Diogo, Pinho, Armando J., Stajich, Jason E

Journal:

Year:

2015

Language:

english

File:

PDF, 631 KB

english, 2015

15

Analysis of Saprolegnia parasitica Transcriptome following Treatment with Copper Sulfate

Hu, Kun, Ma, Rong-Rong, Cheng, Jun-Ming, Ye, Xin, Sun, Qi, Yuan, Hai-Lan, Liang, Nan, Fang, Wen-Hong, Li, Hao-Ran, Yang, Xian-Le, Stajich, Jason E

Journal:

Year:

2016

Language:

english

File:

PDF, 3.12 MB

english, 2016

16

Draft Genome Sequence of the Pristinamycin-Producing Strain Streptomyces sp. SW4, Isolated from Soil in Nusa Kambangan, Indonesia

Aziz, Saefuddin, Mast, Yvonne, Wohlleben, Wolfgang, Gross, Harald, Stajich, Jason

Journal:

Microbiology Resource Announcements

Year:

2018

Language:

english

File:

PDF, 151 KB

english, 2018

17

Parasitoid Jewel Wasp Mounts Multi-Pronged Neurochemical Attack to Hijack a Host Brain

Arvidson, Ryan, Kaiser, Maayan, Lee, Sang Soo, Urenda, Jean Paul, Dail, Christopher J, Mohammed, Haroun, Nolan, Cebrina, Pan, Song-Qing, Stajich, Jason E, Libersat, Frederic, Adams, Michael E.

Journal:

Molecular & Cellular Proteomics

Year:

2018

Language:

english

File:

PDF, 10.82 MB

english, 2018

18

Early Diverging Insect-Pathogenic Fungi of the Order Entomophthorales Possess Diverse and Unique Subtilisin-Like Serine Proteases

Arnesen, Jonathan A., Małagocka, Joanna, Gryganskyi, Andrii, Grigoriev, Igor V., Voigt, Kerstin, Stajich, Jason E., De Fine Licht, Henrik H.

Journal:

G3 Genes|Genome|Genetics

Year:

2018

Language:

english

File:

PDF, 2.81 MB

english, 2018

19

FGMP: assessing fungal genome completeness

Cissé, Ousmane H., Stajich, Jason E.

Journal:

BMC Bioinformatics

Year:

2019

Language:

english

File:

PDF, 1.24 MB

english, 2019

20

Threats Posed by the Fungal Kingdom to Humans, Wildlife, and Agriculture

Fisher, Matthew C., Gurr, Sarah J., Cuomo, Christina A., Blehert, David S., Jin, Hailing, Stukenbrock, Eva H., Stajich, Jason E., Kahmann, Regine, Boone, Charles, Denning, David W., Gow, Neil A. R., K

Journal:

Year:

2020

File:

PDF, 1.36 MB

2020

21

Complete Genome Sequence of Rahnella aquatilis MEM40, a Plant Growth-Promoting Rhizobacterium Isolated from Rice Rhizosphere Soil, with Antagonism against Magnaporthe oryzae and Fusarium graminearum

Sun, Xiaowen, Ma, Wei, Xu, Yin, Jin, Xinmeng, Ni, Hong, Stajich, Jason E.

Journal:

Microbiology Resource Announcements

Year:

2020

File:

PDF, 244 KB

2020

22

Proteomic and phenotypic profiling of the amphibian pathogen Batrachochytrium dendrobatidis shows that genotype is linked to virulence

MATTHEW C. FISHER, JAIME BOSCH, ZHIKANG YIN, DAVID A. STEAD, JANET WALKER, LAURA SELWAY, ALISTAIR J. P. BROWN, LOUISE A. WALKER, NEIL A. R. GOW, JASON E. STAJICH, TRENTON W. J. GARNER

Journal:

Molecular Ecology

Year:

2009

Language:

english

File:

PDF, 1.16 MB

english, 2009

23

Genome sequence of the model mushroom Schizophyllum commune

Ohm, Robin A, de Jong, Jan F, Lugones, Luis G, Aerts, Andrea, Kothe, Erika, Stajich, Jason E, de Vries, Ronald P, Record, Eric, Levasseur, Anthony, Baker, Scott E

Journal:

Nature Biotechnology

Year:

2010

Language:

english

File:

PDF, 997 KB

english, 2010

24

Molecular Phylogeny and Description of the Novel Katablepharid Roombia truncata gen. et sp. nov., and Establishment of the Hacrobia Taxon nov

Okamoto, Noriko, Chantangsi, Chitchai, Horák, Aleš, Leander, Brian S., Keeling, Patrick J., Stajich, Jason E.

Journal:

Year:

2009

Language:

english

File:

PDF, 838 KB

english, 2009

25

The Fungi

Jason E. Stajich, Mary L. Berbee, Meredith Blackwell, David S. Hibbett, Timothy Y. James, Joseph W. Spatafora, John W. Taylor

Journal:

Current Biology

Year:

2009

Language:

english

File:

PDF, 704 KB

english, 2009

26

An expanded family of fungalysin extracellular metallopeptidases of Coprinopsis cinerea

Walt W. Lilly, Jason E. Stajich, Patricia J. Pukkila, Sarah K. Wilke, Noriko Inoguchi, Allen C. Gathman

Journal:

Mycological Research

Year:

2008

Language:

english

File:

PDF, 1.52 MB

english, 2008

27

A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis

David A Fitzpatrick, Mary E Logue, Jason E Stajich, Geraldine Butler

Journal:

BMC Evolutionary Biology

Year:

2006

Language:

english

File:

PDF, 448 KB

english, 2006

28

Investigating hookworm genomes by comparative analysis of twoAncylostomaspecies

Makedonka Mitreva, James P McCarter, Prema Arasu, John Hawdon, John Martin, Mike Dante, Todd Wylie, Jian Xu, Jason E Stajich, Wadim Kapulkin, Sandra W Clifton, Robert H Waterston, Richard K Wilson

Journal:

Year:

2005

Language:

english

File:

PDF, 451 KB

english, 2005

29

Conflict between reproductive gene trees and species phylogeny among heterothallic and pseudohomothallic members of the filamentous ascomycete genus Neurospora

Rebecka Strandberg, Kristiina Nygren, Audrius Menkis, Timothy Y. James, Lotta Wik, Jason E. Stajich, Hanna Johannesson

Journal:

Fungal Genetics and Biology

Year:

2010

Language:

english

File:

PDF, 352 KB

english, 2010

30

Phylogenomic analysis of non-ribosomal peptide synthetases in the genus Aspergillus

Robert A. Cramer Jr., Jason E. Stajich, Yvonne Yamanaka, Fred S. Dietrich, William J. Steinbach, John R. Perfect

Journal:

Year:

2006

Language:

english

File:

PDF, 1.60 MB

english, 2006

31

Evolution of Budding Yeast Prion-determinant Sequences Across Diverse Fungi

Luke B. Harrison, Zhan Yu, Jason E. Stajich, Fred S. Dietrich, Paul M. Harrison

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 1.24 MB

english, 2007

32

Bioinformatics || High-Throughput Plant Phenotyping – Data Acquisition, Transformation, and Analysis

Edwards, David, Stajich, Jason, Hansen, David

Year:

2009

Language:

english

File:

PDF, 660 KB

english, 2009

33

Bioinformatics || Sequence Comparison Tools

Edwards, David, Stajich, Jason, Hansen, David

Year:

2009

Language:

english

File:

PDF, 607 KB

english, 2009

34

Intraspecific Variation of the Aquatic Fungus Articulospora tetracladia: An Ubiquitous Perspective

Seena, Sahadevan, Duarte, Sofia, Pascoal, Cláudia, Cássio, Fernanda, Stajich, Jason E.

Journal:

Year:

2012

Language:

english

File:

PDF, 418 KB

english, 2012

35

Bioinformatics ||

Edwards, David, Stajich, Jason, Hansen, David

Year:

2009

Language:

english

File:

PDF, 10.67 MB

english, 2009

36

Shared Signatures of Parasitism and Phylogenomics Unite Cryptomycota and Microsporidia

James, Timothy Y., Pelin, Adrian, Bonen, Linda, Ahrendt, Steven, Sain, Divya, Corradi, Nicolas, Stajich, Jason E.

Journal:

Current Biology

Year:

2013

Language:

english

File:

PDF, 407 KB

english, 2013

37

Comparative genomic analysis of fungal genomes reveals intron-rich ancestors

Jason E Stajich, Fred S Dietrich, Scott W Roy

Journal:

Year:

2007

Language:

english

File:

PDF, 539 KB

english, 2007

38

Comparative hybridization reveals extensive genome variation in the AIDS-associated pathogenCryptococcus neoformans

Guanggan Hu, Iris Liu, Anita Sham, Jason E Stajich, Fred S Dietrich…

Journal:

Year:

2008

Language:

english

File:

PDF, 4.72 MB

english, 2008

39

Comparative analysis ofSaccharomyces cerevisiaeWW domains and their interacting proteins

Jay R Hesselberth, John P Miller, Anna Golob, Jason E Stajich…

Journal:

Year:

2006

Language:

english

File:

PDF, 885 KB

english, 2006

40

Bioinformatics || Genome Browsers

Edwards, David, Stajich, Jason, Hansen, David

Year:

2009

Language:

english

File:

PDF, 1.88 MB

english, 2009

41

Cellular and Molecular Biology of Filamentous Fungi.

Stajich, Jason E.

Journal:

Quarterly Review of Biology

Year:

2011

Language:

english

File:

PDF, 88 KB

english, 2011

42

Bioinformatics, Volume I: Data, Sequence Analysis and Evolution; Volume II: Structure, Function and Applications

Stajich, Jason E.

Journal:

Quarterly Review of Biology

Year:

2009

Language:

english

File:

PDF, 96 KB

english, 2009

43

Deciphering the uniqueness of Mucoromycotina cell walls by combining biochemical and phylogenomic approaches

Mélida, Hugo, Sain, Divya, Stajich, Jason E., Bulone, Vincent

Journal:

Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 634 KB

english, 2015

44

Twenty-first century mycology: a diverse, collaborative, and highly relevant science

Kennedy, Peter, Stajich, Jason

Journal:

New Phytologist

Year:

2015

Language:

english

File:

PDF, 355 KB

english, 2015

45

MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment

Glass, Elizabeth M, Dribinsky, Yekaterina, Yilmaz, Pelin, Levin, Hal, Van Pelt, Robert, Wendel, Doug, Wilke, Andreas, Eisen, Jonathan A, Huse, Sue, Shipanova, Anna, Sogin, Mitch, Stajich, Jason, Knigh

Journal:

The ISME Journal

Year:

2014

Language:

english

File:

PDF, 160 KB

english, 2014

46

Characterization of the Carbohydrate Binding Module 18 gene family in the amphibian pathogen Batrachochytrium dendrobatidis

Liu, Peng, Stajich, Jason E.

Journal:

Fungal Genetics and Biology

Year:

2015

Language:

english

File:

PDF, 1.20 MB

english, 2015

47

Factors That Affect Large Subunit Ribosomal DNA Amplicon Sequencing Studies of Fungal Communities: Classification Method, Primer Choice, and Error

Porter, Teresita M., Golding, G. Brian, Stajich, Jason E.

Journal:

Year:

2012

Language:

english

File:

PDF, 291 KB

english, 2012

48

Characterization of Amoeboaphelidium protococcarum, an Algal Parasite New to the Cryptomycota Isolated from an Outdoor Algal Pond Used for the Production of Biofuel

Letcher, Peter M., Lopez, Salvador, Schmieder, Robert, Lee, Philip A., Behnke, Craig, Powell, Martha J., McBride, Robert C., Stajich, Jason E.

Journal:

Year:

2013

Language:

english

File:

PDF, 2.61 MB

english, 2013

49

Genomic Transition to Pathogenicity in Chytrid Fungi

Joneson, Suzanne, Stajich, Jason E., Shiu, Shin-Han, Rosenblum, Erica Bree, Cowen, Leah E.

Journal:

Year:

2011

Language:

english

File:

PDF, 825 KB

english, 2011

50

An Interspecific Fungal Hybrid Reveals Cross-Kingdom Rules for Allopolyploid Gene Expression Patterns

Cox, Murray P., Dong, Ting, Shen, GengGeng, Dalvi, Yogesh, Scott, D. Barry, Ganley, Austen R. D., Stajich, Jason E.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.71 MB

english, 2014